NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10000491

Scaffold Ga0311301_10000491


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10000491 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148248
Total Scaffold Genes141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031182Metagenome / Metatranscriptome183Y
F038798Metagenome / Metatranscriptome165Y
F070404Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1000049129F038798GGAGGMHACTRCAKGALITIRMRIAGREVVFHRCARCEANSWQDDTGVMTLGEVLELARVSN
Ga0311301_1000049135F031182GGAMDVRKTVTDAGYIAIGLGVMGYQQSQTRRRELTSRLDAVSGSFNARGREVQGFLAESGRQVGVRGVAARDRAEEQVRTTVTRVHDLGNEVVKFVEPVVEQVQSQLVDLPERVVQVIEPVAARVRELTGSAA
Ga0311301_1000049188F070404GGAVPRVTPAMLRRADTMCRRRLAREYAGGKRNANKSGDARFSVSNRISGDARLAQVELGPPRPEAFVDPTDLEPEQRVLYRAATRGYLEMFGDREGLCTDLGWRTHLDDVGVDLVADIGIAIELPDGGRELRALHFGSRRPNAPLLDDAQLRFALVRTAAWAPDQLAIIAVDVIERDTECYAPDLPAARSDARSWIVKRVEVVQQLAADGRARAGADCMGCPFIAGCDQFPT
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