| Basic Information | |
|---|---|
| Taxon OID | 3300032144 Open in IMG/M |
| Scaffold ID | Ga0315910_10000004 Open in IMG/M |
| Source Dataset Name | Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1061031 |
| Total Scaffold Genes | 932 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 155 (16.63%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 34.0136 | Long. (o) | -118.4673 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004644 | Metagenome / Metatranscriptome | 429 | Y |
| F010981 | Metagenome / Metatranscriptome | 296 | Y |
| F011412 | Metagenome | 291 | Y |
| F016414 | Metagenome | 247 | Y |
| F016612 | Metagenome / Metatranscriptome | 246 | Y |
| F017292 | Metagenome / Metatranscriptome | 241 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315910_10000004186 | F011412 | N/A | MKIIFPILICFCFQFSYAQRLDINALEKILDLPARSADTLLRNNKFNISDKETGKDYINYYYTSYERKDLVKHVLRSLSFMDVYAGADTSRLVLYRTYEEKEEEDLKNQLIANGYLLVSSTANNFIYKKEDYTITNKITVKTAKGTKPLMAYEFELGR |
| Ga0315910_10000004262 | F017292 | GGA | MRKILSERNIAGFLFVLVIIAFSFAHEDSKKRSLNYNVSSKYLSPDKRVPVLTANAAVKKDVVVKGN |
| Ga0315910_10000004373 | F016414 | N/A | MDKKIFIPVFLLIIIVSGFTQVKPPLKKVYGYKQASIPGILIDHSEENDIQPQGKTKPKQNYNYWFYIEFPKTEKINVTGLWISDIRYDIKTDTITDLPVRKIVFTGMANNDTTIMVPYTKNKIILVYPSGESKIDDSKYVLNLARTNELVVRYTWKNKIYYSTLKKLIELAPDVRQ |
| Ga0315910_10000004691 | F016612 | N/A | MKLTPMQRKYLLRASLILLLIAGSYLVLWSATGAHSQKQACSESMEECCKKKTDNDGSGEMIWENLSRQFISISVIE |
| Ga0315910_10000004834 | F004644 | N/A | MFFIIVISLSLFAIQSCDNDTKVKEEKKELSKTDVPVPVQTAFSAKYSTATDITWEDAHEGTKQTYKAKFTLNGKKMKAEFDTSGGFVKEEEDS |
| Ga0315910_10000004835 | F010981 | N/A | MTTNLTLDEMILQYSENPFIDDEMFARPAVQDNNQKQKILGRLLIIASNLFSKAPIKELGSYKRRFEVKYAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |