NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316201_10106231

Scaffold Ga0316201_10106231


Overview

Basic Information
Taxon OID3300032136 Open in IMG/M
Scaffold IDGa0316201_10106231 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2448
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7869Long. (o)-75.1074Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004952Metagenome417Y
F009460Metagenome / Metatranscriptome317N
F020173Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0316201_101062311F009460AGGAGMAKWDLSKLENSASVGAYIDEDDSTPTRPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLERRL
Ga0316201_101062316F020173GGAMICSTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEDEE
Ga0316201_101062317F004952AGGAGMNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICKGIIVQNAVEDQRERTPWVAAYVQERRAARDVLGLATDVPAEAVQAPTEEPKQVDWADVQRKIIAMLRSDEVTYCETSDIADVVGVEPRKLSQHLENMHARGEICRAHVKQRANQQRATLVLWSINADVYK
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