NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315339_1087611

Scaffold Ga0315339_1087611


Overview

Basic Information
Taxon OID3300032134 Open in IMG/M
Scaffold IDGa0315339_1087611 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.1202Long. (o)-123.4856Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008452Metagenome / Metatranscriptome333Y
F009368Metagenome / Metatranscriptome319N

Sequences

Protein IDFamilyRBSSequence
Ga0315339_10876111F008452N/AKAKVRELVLVEWVDIISDDGWTVAEDCHLPTFYTVGWLEYQDDKVIKICNTLDFDDALEEHKKRDKPIGYSVTCFPVGCVTSLSFLNSHNDVS
Ga0315339_10876112F009368N/AMVFHLDAAIQIMDEILTHELVNPEELYEILEYKEKDSESIQEERIWKMFKSFLIRANRLPADVIPFSPELRGPDR

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