NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316218_1102180

Scaffold Ga0316218_1102180


Overview

Basic Information
Taxon OID3300032117 Open in IMG/M
Scaffold IDGa0316218_1102180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1122
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062371Metagenome / Metatranscriptome130N
F100212Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0316218_11021801F062371AGGAGGMSELDELQVGAATPAPEATPAPEAAQPQPTLAEMPLEDVVKMPESEIRAKLAAEMIDAANAVKSPREGVDFNIPLTDGQKLLISRIQIKKLDLAKQKADIEANEAKVDAYFHGQLVKIGQDNKIDMAKFVLSEDLEIKPMPKQPVPAPRR
Ga0316218_11021802F100212GGAGMSSPKSSRVIPIRTVIARIIRNRPTSPQAFREAGIKLRYLDEGVFRQVFKISGCPLVVKFPLEGEIADGVQHSISEVNRIKRLSKIKELVPHLPKIHYHDRKNGVLIMQFYPRPRNDAETVEMLGKVIKKLVSRIARVQMSDTHADNVRKRRGDWTSAVFTDLGY
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