Basic Information | |
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Taxon OID | 3300032117 Open in IMG/M |
Scaffold ID | Ga0316218_1000588 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48112 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (91.80%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001715 | Metagenome / Metatranscriptome | 647 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316218_100058820 | F001715 | N/A | MTQYIPDVEENIPLPKNAAEAFPELSPAEELKMRANAIKLLSDLTGQPLTIDKNDINEAEHLAREMVENPQHRPEFSKYKNETLAFLAGMVAQMNVSIVDDLADLKMYVVNKLVAEIENARDPKIRVAALAKLGEVDGVDAFKKRSEMTMKVQPIEEVERELLKTLESIEHKVIEVEAREIVDRVD |
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