NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10839363

Scaffold Ga0315902_10839363


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10839363 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042866Metagenome157Y
F091911Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_108393632F091911AGGAGMTTYYRLELLDGDVWIPNQQRFTSPYAAEAYRAKVIADPRHWAYPLIVEQGCPTQIVEVTERVVQEFPGLPVEGE
Ga0315902_108393633F042866GGAGGVSSGTQAPTLSDTWRTLTAAIAIKEVYDRVQVIARTATDARQTRIQWHHEGRCVMTVTIRDMSHDYPIEVSGANRVTSWNRTGERVNRDHFGGLVASMAGQQVSD

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