NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10461652

Scaffold Ga0315905_10461652


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10461652 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038107Metagenome166Y
F104548Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_104616521F104548N/AAGALINAGAQRVFNNSKYFARNGSGVKSGTWYAGSVKLISETPLQMYNSVLRGFNMKNDLLGGTSPYIRHYSDFIETTFGHLISFQATGEDDMYTISGLDSSQQPLSIAWEVIGGDTVADGSTGLAGIKAGQKVINDGLVYQSSDSCVPVIVAAYSSHLEVTAGRNVQLYS
Ga0315905_104616522F038107N/AMSAIQNPFNNVGSSLPPQPFGSVVGQVKNNENVLIETAGLNPYNFQDVGNELNAWNDVQRVQNSAFPPNRTKEFNIDTSNKFYPRITPLFAQGDAQNNSLLNNPPDRILNLDMSSQRTYIKPFYTANEQYGSVLPIEVNNSILPLGPVYVKKIVLPSNNIN
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