| Basic Information | |
|---|---|
| Taxon OID | 3300032092 Open in IMG/M |
| Scaffold ID | Ga0315905_10334667 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1442 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F038241 | Metagenome / Metatranscriptome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315905_103346672 | F038241 | GGAGG | MLGYTKTDIDEMGNAMHDAKLFYILKSDIVRVDEDPVVDGLLKAQDFLQGLWAEGYFDNE |
| Ga0315905_103346673 | F007644 | AGAAGG | MSKSSHFLEYMKLHLISLEQDLEENPMSLHVVDIEGQIYATKHLLSVATDIMNSSNERYE |
| Ga0315905_103346676 | F000441 | AGGAGG | MKMSDDYLNDQLNKAQALLWGGSETENIEAHNIISKLIKDRVEQVGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |