NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10226098

Scaffold Ga0315905_10226098


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10226098 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F013087Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_102260983F001561GAGGMQTREQKLKLLKKTIETLWHGVADTKEGDYPKIINLYQEVLKLDYKDRDSWENMIWLIWSLAINKKDTALLFDAEKFAKRYLSLNPNGYRAYEYLGMFYRTMLIDYKLSLRFYESAIRWKDSQVTTHHSLINLCLKNNDKERAIGYCKLTLTRFPNDPYTVSKLKNLSQ
Ga0315905_102260984F013087N/AMESTVWIYFSKTGTGYELKGSDVVSGFDAFIYTDGTYLIEYCFSDIKDMMHFFIYEWDNSQKKRRTIFEGYQRQNILVNFAKNVHVCHNVRQAIYKEYMDEEELKNANS
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