NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10117210

Scaffold Ga0315905_10117210


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10117210 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2675
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011742Metagenome287N
F020138Metagenome225Y
F021243Metagenome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_101172104F020138AGGMNQQQTTRLNAFWQDVEAHKALNPSLPESALVILKSVALDALLAAQDIEQIGVNDDTN
Ga0315905_101172106F011742GGAMTTIEFVPFEWVDDDFNPESDRIEVDYQWHEADDSVGLIAYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT
Ga0315905_101172107F021243AGGAGMKEPEDEAFEELALKQGQWSRTSGWRKKQIAHMDVYSHPAEFTHLHRNDVIEEVAQHIEKCSLAFGKDSIQSFTVYIRNMKK

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