NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10076210

Scaffold Ga0315905_10076210


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10076210 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3393
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010897Metagenome / Metatranscriptome297Y
F025679Metagenome / Metatranscriptome200Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100762101F032572GAGMTTYKYISDYVNKPTIFCYILDRVVNNNPYLFTGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0315905_100762102F025679GAGMTKTFKIGETALGGTIKVSIPKTLTNIRIDVIATNHITRSSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILKWITSKWQIEIPKNII
Ga0315905_100762105F035215N/AMSRQKRRMKMKSSEQITKEINDRIAEYKVLMIDHDNNQDAVNELESAVHELEHLLEWINE
Ga0315905_100762108F010897GAGMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPKYGKYIRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNFKLNLV
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