| Basic Information | |
|---|---|
| Taxon OID | 3300032092 Open in IMG/M |
| Scaffold ID | Ga0315905_10060140 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3854 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F051126 | Metagenome / Metatranscriptome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315905_1006014011 | F011299 | GGA | MMTRKDYVAVAEILKYASDKAHPALFSKMVNDFAEMFAKDNERFDVKRFHEASGYHVPKFTSR |
| Ga0315905_100601407 | F051126 | AGG | MSAKSISIPALLVGTHYRSISRPNEGTIVYASKREGLWYGENLEAYAIEVRPTHGLNNFWATIAVNVAK |
| Ga0315905_100601408 | F007263 | AGGA | MLNIIDKTDFYEIADEQHFCCDESQFKYYCEKHLEFMGCYFCEFDYDKDCEEQH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |