NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10013028

Scaffold Ga0315905_10013028


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10013028 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8424
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011078Metagenome / Metatranscriptome295N
F037638Metagenome / Metatranscriptome167N
F070031Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1001302810F011078N/ALELSKADWLKKATKNIAKNNELARELYQFYFLTILEKPDEQIEKIYRDGYIQFWSIRLLYLCINGNRHPFGESRIYDQHDVYELDFAEEIDLLDEREQAEGIEFERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKDRCTQK
Ga0315905_1001302812F070031N/AMKIIDYRRFNQLRTKAKDLPMYKEFISLVEKDKKVQCYNTLQDMLLDAFKWDKTPQGHEYWQSVYDSIVLEEHPKCPKCNQIGKVWLLKTVNKHKCQKCKIQF
Ga0315905_100130288F037638N/AMSNIEFILSLQPLYDTWKKTQVFAPSPEQGAILNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPKRRRKNESNP
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