| Basic Information | |
|---|---|
| Taxon OID | 3300032092 Open in IMG/M |
| Scaffold ID | Ga0315905_10001074 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29738 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (78.72%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F002997 | Metagenome / Metatranscriptome | 514 | Y |
| F024506 | Metagenome / Metatranscriptome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315905_1000107427 | F002085 | AGGTGG | VNVIAPVVGTNVIRYADFVRITTGSAVYLFSTAPYDITVPAIDALPFTGLSQLVKVGSAQRDIKSTANETTVTLVGIDTANLAIVLGADIKGSQVEMWHAFFDENNQLITGAGSGLYQFFNGYINSFSISEQYMEEVRDYLGIVTISASSIQLILQNRTAGRYTNNPSWTFWNSVDDSMNRVNYIQTINYQFGKTK |
| Ga0315905_1000107428 | F024506 | GAGG | MSLQTILSIAETVNINDHKFAGQMLSRNMRISTSEILTVQPFQFGIKPMNYLQYSTNRGVLSTLRTADRITEQYLNFGSTGWLNYIKYQGDMSGVQAAACQVQTSSANKTIVLGSLPSISSSLYIVKAGDFIQIDRYAYIATANVQRGGGATVNIPVHRSLMTTVSVATAAVIGQYGTTVALGGSTYTGTTFPVVVRDYPTYTLVPMTNDSFIAWDGAFTAIEVVL |
| Ga0315905_1000107438 | F002997 | N/A | MVKRYENIAVNTLSFGKSDFGEQSTTQTLWFRTRATIADVANSVRISDKYRVYTDIVQMTVNYTPNIKLIVDNQNAYSINWRGYDWRVDNVRETNDRQFAQLTCVRSDPVVAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |