NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10000747

Scaffold Ga0315905_10000747


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10000747 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35449
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F002009Metagenome / Metatranscriptome604Y
F002149Metagenome / Metatranscriptome589Y
F002826Metagenome / Metatranscriptome527Y
F003962Metagenome / Metatranscriptome459Y
F004010Metagenome / Metatranscriptome457Y
F004760Metagenome / Metatranscriptome424N
F007467Metagenome / Metatranscriptome350Y
F010449Metagenome / Metatranscriptome303N
F022371Metagenome / Metatranscriptome214Y
F045608Metagenome152N
F090072Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_1000074710F010449GGAMGTDDQIGDLRERLARMEERQLSLYKMVETSLSNYADVVNRISSLEHLRTKALAIAGVVGLVCSMAWDVLKNRFNS
Ga0315905_1000074714F004760AGGAMPIYQYTDTRNGSVVELEKSVANRDSVPKHLKRFTFPQRLAVFGAGESPSDPRLSSTSTIMKGYYKQEQKLGSRFKSSFSADQVKRAWSRKGD
Ga0315905_1000074718F001459N/AMRKIKAILAFIRNQAWVNEPKWSSEDEKAWTGFLGTPTGKRLSLILLNLTLRNNASATEKNNAELAEACGYARGFRGCVAVLESLATAKLNSAIQDGMDGSDETAVN
Ga0315905_1000074729F090072AGGAMTEDEIIKAYLSRLGRKGGSVKGPQKVRPREHYQKAVNIRWAKYRERQQTEAQPPKR
Ga0315905_1000074731F003962N/AMEDDEGQEGRVLNQDREQLKLANKFIGLLQKENAQLHSVLRLLGQLVDDMNANCSFEVFEHQWQGLTDEVKRLSGFFETHQKALQSLHDACPETFDTNEVDES
Ga0315905_1000074738F002826AGGMQVEAKDRLKWAREILLIARNKLAVERDRATHGHAIDIIQIITMVDAASLVCKEVVGEE
Ga0315905_1000074739F004010AGGAGGMPLGKDVSKNMSELAADNRKKGKERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS
Ga0315905_1000074742F022371AGGAMFCLLDLGTIVWVISSFILYSSLLLSAIYCAGYIIFKLIDYIRKELDL
Ga0315905_1000074746F002009AGGAMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLLKDRPIHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0315905_100007475F002149GAGMTAIEYIEESGVPEAMWPNLAEWFNWFEKQGMVGIVRDEEGIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLAERFGPRKRITFNRSGKPRSYDYMTFMRKALL
Ga0315905_1000074750F007467N/AVNEKEAWVKFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISKANKTWRN
Ga0315905_1000074754F045608N/ADQSLDVISYVLRQNEPATVSQIRRIGYALSGQPDTSVSRYGRIYKPSEELSALFGIRPQSINVSKALESKASRFNTDMADVGRIFTETYGAVGNVPEAKVREQFDKMQNRRRVMFDEANKDFHAAMLLGLSRSEAISAMRAGGMGVDNASAIANNRYRDYKISKSLTKSMRRELSPEEMQKRQEIGRELMMQQGE
Ga0315905_100007477F000635GGAGGLTLTEIAQYAGEKVGKTDSDTLTFLQKSASLNYRRVWNFAPWRETVTNSTYTLATNTRTVSLGSLVENPLSIAYDNSELQPMDLATIVSQDSSLLNLDTTGTPSFYYFKGRNSGGTAQVDVYPTLQTSSTAVLQVIEKLQCITRNSYTVDFPPSTNSLNDELRLPHVNHVVLSLTHADALERERQYGKAQVVTQAANADLAAMANYELSQVGGMKQITPNSLGELTIEEII
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