NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10000248

Scaffold Ga0315905_10000248


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10000248 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58673
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (21.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008165Metagenome / Metatranscriptome338Y
F016965Metagenome / Metatranscriptome243Y
F044445Metagenome / Metatranscriptome154Y
F050993Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100002482F050993N/AMRVIRINTTAWAEEDFYLVTTLDDDQIAEVIQPIVNAERDGYEEYDNDTLVKAIKDRFPLEYSDMYTEFHKLKF
Ga0315905_1000024831F016965N/AMLNTFTYNGIEYTITGPIEVISDTQLHVETDKGIILVDNTMDIYEEMLKLIN
Ga0315905_1000024869F044445N/AMKQIVYNSVTCLECNNTIVSHHRHDYVVCECPNNAVVDGGTAYLRYGAKDMSKIKLFTLYTDDDFMILRKHATRGSRGKDGDQPLTWIPISDMDDDYLEAVLDYGGPDWQLDLIRKEIDYRSSLLLKKLEY
Ga0315905_1000024872F008165GGAGMKDNKYIGAWDLEVDGKYVPRTVTIESIYQDTFVGEMGKEDKVFIKLKEFDKAMVCNRSNFKRLETFFNSFDPEDYMGKEIVLTTEKVKSPQGLVDALRFSTRPIPKKELPSLTEEQMAKAIDAVTSGRTTVDKIQKQYKLSEDQLKMLTND
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