NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315321_10344114

Scaffold Ga0315321_10344114


Overview

Basic Information
Taxon OID3300032088 Open in IMG/M
Scaffold IDGa0315321_10344114 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005524Metagenome398Y
F062171Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0315321_103441142F005524AGAAGGMDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPAKDSWERREALSIIPHAAYDFHIND
Ga0315321_103441143F062171GGAGMKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDTWIEGINWDGDPAWWIQYVGDEAPTWNYEEELTLVTEGN

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