NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315321_10309322

Scaffold Ga0315321_10309322


Overview

Basic Information
Taxon OID3300032088 Open in IMG/M
Scaffold IDGa0315321_10309322 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005336Metagenome / Metatranscriptome404Y
F012510Metagenome280Y
F023211Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0315321_103093221F023211GAGMKTFKGYLTEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDHAGLGRLKKLEGGKKT
Ga0315321_103093222F012510AGGAMRTFKEHLNEVYKTYPGKGWLMDGPDIKPKDIIWRSKVHHWDDTVRSDNTRFIITKTGKGKDKFQMWAMSDKSGEVLFHFGDKSTLDAAKEFASIRRWQEKK
Ga0315321_103093223F005336N/ADPKNKEYLKTVPEIGIGVWYKLQTDFKDDGKKISLIIADYIDSVNVILKKHKKDIQGAVHGYYVRRGAVAVKHPSGRMVGGDSEIKEWNVYDEQIVDKIKIIKVHTFNTTTRETDWIAKSVIPRLGKIPLRHWVGGATELSTYVSQVAEAEVRSIGRSKP
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