Basic Information | |
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Taxon OID | 3300032073 Open in IMG/M |
Scaffold ID | Ga0315315_10094349 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2781 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019754 | Metagenome | 228 | Y |
F022313 | Metagenome | 215 | Y |
F023484 | Metagenome | 210 | N |
F098218 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315315_1009434911 | F019754 | AGG | MNNSDDFMIPSELEPSWPPSDDDIEAMELDAYDRQKLDDLIAQELWRESLPSVPTPAELNPNLQ |
Ga0315315_100943493 | F098218 | GGAGG | MVMTSFSSWSKRPEEMRAAAKTRAIAALHKKHSKGLTTLERAYLHALKTGRLDLDD |
Ga0315315_100943495 | F022313 | N/A | MTYHYQPQQEYEQTKIERILKELQSIIDREKKRHMMDEHLSHSMRDLLEYEIIPLLEAEVNYDPTPQTSYDFFHQ |
Ga0315315_100943497 | F023484 | N/A | MNINTESGDFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVLDADQVAKCKTFIRNHS |
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