NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10094349

Scaffold Ga0315315_10094349


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10094349 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2781
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F022313Metagenome215Y
F023484Metagenome210N
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_1009434911F019754AGGMNNSDDFMIPSELEPSWPPSDDDIEAMELDAYDRQKLDDLIAQELWRESLPSVPTPAELNPNLQ
Ga0315315_100943493F098218GGAGGMVMTSFSSWSKRPEEMRAAAKTRAIAALHKKHSKGLTTLERAYLHALKTGRLDLDD
Ga0315315_100943495F022313N/AMTYHYQPQQEYEQTKIERILKELQSIIDREKKRHMMDEHLSHSMRDLLEYEIIPLLEAEVNYDPTPQTSYDFFHQ
Ga0315315_100943497F023484N/AMNINTESGDFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVLDADQVAKCKTFIRNHS

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