| Basic Information | |
|---|---|
| Taxon OID | 3300032073 Open in IMG/M |
| Scaffold ID | Ga0315315_10002152 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18034 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (17.50%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025412 | Metagenome | 202 | Y |
| F028650 | Metagenome | 191 | N |
| F034931 | Metagenome | 173 | N |
| F036312 | Metagenome | 170 | Y |
| F059442 | Metagenome | 134 | Y |
| F076108 | Metagenome | 118 | N |
| F076111 | Metagenome | 118 | N |
| F079336 | Metagenome | 116 | Y |
| F100003 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315315_100021521 | F028650 | N/A | MRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDREDVLKCKPSELAIDLSHLLVEPSRTLKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDKNNKVMAIEPSYFRNLAEDIRNTVTIDEIYGVAVFFCNLSASLTKCTQDYLSQKIENMTEQSKNAILEVAKDLQKDGDGLPHSIIS |
| Ga0315315_1000215216 | F076111 | AGGA | MTLEQLTTKLELNILIERVLEKNGAYITPLSKEDALKGITLSKQTKDTLNTLKSALEQINQLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITEYIELHKNKTT |
| Ga0315315_1000215222 | F059442 | N/A | MRKEDRFKPYVYKVYNSRGNLEEYSRYYYTKKEAVEWYNTQGKWLEKHFNRKLILIDTHLNLFTNVSSTLFNR |
| Ga0315315_1000215224 | F079336 | N/A | METILRTELETADKRIIVLESTIETYKRIVASLDERLELMEKSHAFELENYYTKNK |
| Ga0315315_1000215226 | F036312 | N/A | MKRKLTHSLHEVQKVNKELYEVFTTDFWDNGTYTTKDISHHATEREAIEQKLINKHKNLN |
| Ga0315315_1000215228 | F076108 | N/A | MTRVELSDDEIEYSTYFPIQDPHDIMYSFEEMVRMYTNADLEVDNYILERAKEIKIKNSN |
| Ga0315315_1000215236 | F034931 | N/A | MTNSGELIAINGVVIINDTVEKVLNADSYYVAEDTVIARIEVNGDTATDVLASYITTPATGVKAGVLITPQRGDYFSAITLTSGSVVAILK |
| Ga0315315_100021525 | F100003 | N/A | MKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRIRRNGLQ |
| Ga0315315_100021527 | F025412 | N/A | MNYRELKWGALKSYATKLGIKTKGMTKQVLIEWLDAMPDVAHGIEQLEPFKGIKQHHPLFDEIKDYLPYLKAYKKLNAVSRDPKINKAIATLFVKYIETQKNAKINIGCGRCVSSYYQRMIANYNKLADEYGGERI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |