NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318524_10764644

Scaffold Ga0318524_10764644


Overview

Basic Information
Taxon OID3300032067 Open in IMG/M
Scaffold IDGa0318524_10764644 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055537Metagenome138N
F065188Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0318524_107646441F055537GGAGMRTRLLTTITLAAACAALAGLGQSVPALAQGSLPAGGPAFSHFAYSRVQVTGDVSPGSLGSPAAYTPAPCWVEPRFTGANSYHAGDPQPSATGDADSYWWWFVGQEPALAGVLGRIQGLRQAVNKVFKA
Ga0318524_107646442F065188N/ALPARLTRYLENVAEGKRSDGTWFVSRLAVYPAASTQGAMCR

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