NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10086262

Scaffold Ga0315284_10086262


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10086262 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4231
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F011281Metagenome / Metatranscriptome292Y
F045601Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0315284_100862621F045601N/ARDCPEGKIPAVFFRRNGRKEWLVILTADSVCELARQIAPSDVKVQYMPTIAKGFYINTPEDLDRLQPTTINPNK
Ga0315284_1008626211F011281GAGVSEAFKQKVLTASVDRYVLTPTQCTMLRQDAEIIGMKRAPVLAKDGVTRTVSRTRTCTSCWVPFATHYEWIYKVMRELTDSINAEQWRFDIQGIQQLQILRYRPLQK
Ga0315284_100862626F003304GGAMKKALVTQAFGDEWKKILELTKPRMEAYCQRHQIDFISLEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAFLDRKLAMGQLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYKDGMCIHYAGQSNNMTNLTNMIKSDDAKLVELGR
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