NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10003035

Scaffold Ga0315284_10003035


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10003035 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23904
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069394Metagenome124Y
F094469Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_100030351F094469AGGAMNKNALQNILGHPDRDELISKLVIGFPADQVHDWLKDKYTNVSEAKFVIAEKSIKSFQANYLDIYSMIQEDLAKTKSAIATNTEDQLELAVKNLPAYKSVMLKTAGEELDIRHIVKNLCVAVETRLAQVFDEIQENPRDINTRIDRLLIDYAEVLGNILEKYYKFTEAPADQVVQHNVTLQVVDQHISVFHDVMKEVLSKMDLETSLYFMEVFSDKMSKLKAPDKDAPPNTEMRLVEAKLLNETISKKINDTDDKK
Ga0315284_1000303515F069394AGGAMLKIIKAYAIQMSYDVSDSEKTKAEQALLYFKASEKLLKKASDHLNIMKTPFKENPDMTTEDVMSARAAIRRFRDTVIENFNEFKVEAFRCVHIMQHFSSDTQTVKLMKSFITSVDSLEVLVNEFADLFTDLQSKDFSKNIVVSMESIQKECNGLDKIIDERIVNHIQTNILSKNWTDSISNDLQMKVEQKTPLILDLFNKRQEQLNELIKERGSSGN
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