NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10001590

Scaffold Ga0315284_10001590


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10001590 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32498
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001299Metagenome / Metatranscriptome727Y
F012328Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_1000159010F012328GAGLGPLLSLKGKEMPINKPITPEPSPWEDEAISSVAPTTTPEPTKSKKVVHESKTHKLLLQPISTEFDLEGLMTDFPTAKELERFVFDQTGIVLNLKGRANKLKYQIAMDVLNGEEVNVAYTGSENPYVEKSELIPVDPIKPTPERDESLPHHSEIQNTFYVPTFPHPDAEARAQDKKCHMIFRKYKNGMISYEILGPLDQKPYGEKIDKYGRNRPEIIKWVDPRTGEQVAVREDGTLTPQGKRLRGTMLTYRVNNSNQWNVWVDREFVSLNTNIAHNPWDITK
Ga0315284_1000159020F001299N/AMNNTPEYLDDTDPEKNFNYYRQDNGGMITNHNGLADKLLQNNDLYKSMKGDWKRTEANKSKNIIVTTGREDGKFYIKREQLNTQAIMDHCKEYRKSAEMGIPDPLAPLMPDGKLGHKWMELPTVISVRISDQYFGGIPWQAIKNDRTLKAQFYRVVQQEYPQYVCYPGGKLPIPVEVPYPTKVGQQKFFQGH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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