NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10253835

Scaffold Ga0315906_10253835


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10253835 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1614
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F014250Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0315906_102538351F000868N/AFYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK
Ga0315906_102538354F014250GGAMYSDILEPRLQKLIDLGEAGTDILHGELKNLMLEAETQLGLAQAYEDETEEAIDSMERKYWEGQLDALTHVYGLTYQLAFAISERKKK
Ga0315906_102538357F001019GGAGGMNYGPTLEILEVEYSCSPGGVDTFEVYEIDHLTMDMPIYETESLTDAVQFCYNLGQDFTVRTVAAW
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