NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10151167

Scaffold Ga0315906_10151167


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10151167 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2243
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009005Metagenome / Metatranscriptome324Y
F018718Metagenome / Metatranscriptome233Y
F023789Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0315906_101511671F023789N/ARERTELQSKIQRLEWLLTECIGMEEYELCSQIRNVIQRKYELLSTNQSENQIE
Ga0315906_101511674F009005N/AMYLTESEMIERAGQIGMDEELVSYAKQIQRQLSTEGDTADWLDCLEMAYNELILNEL
Ga0315906_101511675F018718GAGMTIREFYLKNYPTDDLGLELAETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYV

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