NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10037239

Scaffold Ga0315906_10037239


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10037239 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5192
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029664Metagenome / Metatranscriptome187Y
F031356Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0315906_1003723910F031356N/AMTPKDKEMHFWAGVWVSFAALILFKALEVPYCWLWVLCAVVAAAIGKELKDLLDYGKFDWRDAVYTIAGGMSGFILSFF
Ga0315906_100372399F029664N/AMPEWLKRLTKTDIRNSLAIIIVIGSFLLLYLLQVKPIPEQNHDLVLTAGGFIFGGALAGVIGFYFGSTKIDKKNDTEG

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