NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10008138

Scaffold Ga0315906_10008138


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10008138 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12601
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0315906_100081381F001897N/AWLETHIIEFNAEKGYVLVQAKAWRNQTEINPAGIDHAHGFLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGDVPSYKTREEAEQADETGWAVNGVPMCAHGSMRWNQSKPDAPKPWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV
Ga0315906_100081382F000403N/ALDVGKMSDYIEIIHPQSMTAKLLCNGVVVEEYKIEQCDKCSQLRRLDQFGYQKGYDRTDNIIWFCGDCR
Ga0315906_100081384F003182AGGAGMHILQFDCAICKKLYGKPKQRFGLKKGNELTQHEWFAQCMGCGTFGIKIVDDARIKELSQ
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