NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10436431

Scaffold Ga0315330_10436431


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10436431 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F011629Metagenome / Metatranscriptome289N

Sequences

Protein IDFamilyRBSSequence
Ga0315330_104364311F003769N/AVHMETLYAVINNCYNNLQVIEADCTSASYFINSANIFAQLQMLYCENECNDYVSIQSVMEIFASNITYYDESSLYTQVVENTAMQKVLLENYVYLSN
Ga0315330_104364312F011629N/AVKDLIRTRFGGSLKQAYLNKCYSNKKEIADKRNMAFAVDGDVYKGVDLTALAQEIGCKRVKLHTAFLRGFADGCWLRLQHVNYNK

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