NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10085283

Scaffold Ga0315330_10085283


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10085283 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F008022Metagenome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0315330_100852833F008022N/AMTTTELQAKIEALQAALDVKSQEQDAYRGQIDTLKKQLADLNKPKLTPLQFDQLSDAIETGIMNYDFSDTDCYSIDFGIDYDGRVHCESFEFDNADDLAREVYNYVERLFAEADAPEDNNQLNQD
Ga0315330_100852834F005491N/AMSAFYKDTRFNGKLVRLEDVIDELYNRALETIDEGLYELLENKDDDEFYMDYKEAFPLIVEKLQKFHDGED
Ga0315330_100852835F004523N/ALDNMEYMSTEIRSAREAMTIFKILGIKDISTERQRKNGTTVYELPIQQMWQTLDPKPMRFACYKSGYVRNVSPSNSSAYQINQTKIVPSGYKDWTRTERKLIPSWEERLIYLAKFIIKNYYQKPTYLISDYAIKCLKEAYYEQNKTGLPFGDDIQVIINGHRYNLS
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