NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10011136

Scaffold Ga0315330_10011136


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10011136 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6083
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F029594Metagenome188Y
F052260Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0315330_1001113610F029594AGGAGMLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNQAHISIAELKKDEV
Ga0315330_1001113616F052260AGGAGGMFVILATKPLNDGTKGFRFNFGIRINGKILGKKGFVRQRKLQSNGIKFTKGDCMNAYHLGKTTVYTEQSVNKTTARKFCHLAG
Ga0315330_100111362F015102GGAMESDDDAEDKNAPFDDVTHWVGNLPSKDTDSDERTNKRNTRRKTKSNFLRKKLGLEKT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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