NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318556_10270816

Scaffold Ga0318556_10270816


Overview

Basic Information
Taxon OID3300032043 Open in IMG/M
Scaffold IDGa0318556_10270816 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007034Metagenome / Metatranscriptome359Y
F095865Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0318556_102708161F095865N/ADKLLDGRVIRSVGNTNISYFDDPRFDHAIDGAQKLTGERRDRTYGELGVAVARTEAPLAAYAVLNARVFVSSRVGCLTYQPVYGVDLAAACLRGR
Ga0318556_102708164F007034N/AGSRDEHSHGRHTANVIDELRAAADALNRGDPGPLAALFADDAEWRGVSDGHLWWKRTPS

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