NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318545_10178894

Scaffold Ga0318545_10178894


Overview

Basic Information
Taxon OID3300032042 Open in IMG/M
Scaffold IDGa0318545_10178894 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064870Metagenome / Metatranscriptome128Y
F087561Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0318545_101788941F087561GGAGGMIPKLTRLLAAIGIAAMAGALPGGSALSADEPADLNSLLPPQTLPQGFESAGELLRDQEEAMNAPFYSAWLVESSRFVDVPSGSFMPDRAFIPGSTDPKHNLPFFDFPANVGIIKGKDGKITLYDSGWKQLEYIFDWNTSCCWWD
Ga0318545_101788942F064870N/AALATYRRAETRISALQPPPSLAHAHDDYLAAVRLFEQSAVEVLKMFDDGNDEHLLAAYPMSQEGSDKIREIGAKFWEDEFPPN
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