NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307411_10424699

Scaffold Ga0307411_10424699


Overview

Basic Information
Taxon OID3300032005 Open in IMG/M
Scaffold IDGa0307411_10424699 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F081910Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307411_104246991F003507N/AACGIEAVQVDGSQEHLVLPETLAQFRQRLDEALIDERLAIQAAAAMEEGLVSPAHLLVDPFPSEQGSQRVTDATTLYKAQKKSATSSRPSRRPAPRKRLR
Ga0307411_104246992F081910N/AMRRFGRQCRGQGKILVTVVRQTEQQLLQLGSPIAALAQAAQPGLQRVTHLAEPQRDRLAKQLQAAMEAHHAISTQSRRLTQGKRLHHCKIVHAYDGTIAPILKGKSNCPAQFGRKPGLLSEPTTGFIFALRVPPGNPSDPSYVLPMLDKAQGAINRVSRPRRLAIHSVAGDLGVNDAALREALHARGILTVGIPQTVAPIPPSPTQEEVCESLTAAGLHRKRTPHQVHLAFACGYSRPVVESHIASLLARGAG
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