NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306922_10127075

Scaffold Ga0306922_10127075


Overview

Basic Information
Taxon OID3300032001 Open in IMG/M
Scaffold IDGa0306922_10127075 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2714
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000705Metagenome / Metatranscriptome927Y
F006032Metagenome / Metatranscriptome383Y
F036855Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0306922_101270751F036855AGGAGGMAKFILVKFSLMAEITDADALREAALRKFDANDSTSDDYPDTADWHASEEG
Ga0306922_101270753F006032AGGAGMKRTLIVDAASASRSLRVLVTSVMLFAVLAVTNTVIAPSGALAAPSAGPGEVRSVFYTTSGAGNGLPNGAEIFAIAVRGTTVTTRDVGPTHGGDCGSLARSPRGTLYSMCGTLFGTQQLATIDQRTGRAHLFGRHVHGLAVMAMAFGRNGTLYAVGDCNPAPKTFECTPGQAAYNSLYKVNARTGVFTRIGSTGAPQLFMDLTFDHNGTMLGETSTVNPSLIPAILYRINPATGKATKLFNLVGSNTVMGLAFGPDGKLYATDFTQNPGLYRIDTKTGFETAIAALPFGFSSGLELIGSG
Ga0306922_101270755F000705GGAGGMNANDAMLTALATAQRGSMVADTAPNAPASPSFDLVLKAAAGSALGSSGTPYTLTISAIDLTAVTQGWPTQTLHQAFDAANGWTSSGNGPDYRCTQTVTIPVPGGGPGGPLAGHTLQCVASLVSQSAQIASIIHSAPFVLV
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