Basic Information | |
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Taxon OID | 3300031999 Open in IMG/M |
Scaffold ID | Ga0315274_10440324 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1496 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5119 | Long. (o) | -110.3577 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F001897 | Metagenome / Metatranscriptome | 620 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315274_104403241 | F003182 | AGGAG | MHILQFDCSICSKLYGKSKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEE |
Ga0315274_104403242 | F000903 | N/A | MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAEYVVAKKLGYEYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPIVIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHSAI |
Ga0315274_104403243 | F000403 | AGG | MMSDFVEIIYPQQMMARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKKDNIIWFCGDCR |
Ga0315274_104403244 | F001897 | GGA | MAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMAAIKTPAADYDYWTTKHGDVPSYKTSAEAEESGTPSFGSSNDSAWSADATPSCVHGSMRWNQSKPDAIKPWAGYFCSEKVKEKQCKPTWYVMTSDGTFKPQV |
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