NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10416677

Scaffold Ga0315274_10416677


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10416677 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F015211Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_104166772F002259N/AMGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIAFFVPSAADGIAYNGIGFAGIGVKFDLIIGNKTVIKDATCELGGEQAFYNDGTQPSGVIDLEGVGILIPPQVEYYLIAKTYDAQNRTAASSRLGCYLFGTGALLNFNTTI
Ga0315274_104166773F006697N/AMANQVSKLAYVDNKLGVSLPGQQTTRVIYDSVNATAGQQFFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMSSAVSNIADHLNLNITVGNQVVLKDFDPSFNCSSRGVSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQISNALIALNDDVTIVLKGYGRIFSAGNSF
Ga0315274_104166774F015211N/AMASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVP
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