NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10333936

Scaffold Ga0315274_10333936


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10333936 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1791
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035668Metagenome / Metatranscriptome171Y
F059759Metagenome / Metatranscriptome133Y
F059760Metagenome / Metatranscriptome133N
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_103339363F035668AGGMSCNNCINGNCTCVRVNAVNIFSVDYKAGKSEGQRAEATRTADALVELENKGVINNAQLQAILDLILEKLTDQVDIW
Ga0315274_103339364F059760GGAMNETTDAITKAIQDSRDNAMEAVLSIIESYKRLQMPEKPKDMYDAGAKDAIDTLTVHLTQFADGLKAGRK
Ga0315274_103339367F102815AGGMMREPEELFLDAIAAYKAWIACGKDFLNHADLYDVWDDAVVAYGQSIFLERNRAVHQVLQGLEVIR
Ga0315274_103339368F059759AGGMSKEQIWALLEIYRQMQVANTMIQYNDAFEELHLFVEENCLKVGA
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