NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10230690

Scaffold Ga0315274_10230690


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10230690 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2267
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F002433Metagenome / Metatranscriptome559Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_102306902F000403AGGMSGPIEIINPRTMTCKLMENGVIIAEYKVEQCDKCSRLVKFDEFGYQKGYDRTENIIWFCGDCR
Ga0315274_102306903F001897AGGCGGMAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDHAHGFLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETTAADHDYWTTKFGDVPSYKTREEAEEADETGWSVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKAKEKQCKPQWYVLTSDGTYKPQV
Ga0315274_102306905F002433N/AVSVGEWTAVSGLVLAMLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEARLDQLLLEIALKK
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