| Basic Information | |
|---|---|
| Taxon OID | 3300031999 Open in IMG/M |
| Scaffold ID | Ga0315274_10012359 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12179 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5119 | Long. (o) | -110.3577 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F008808 | Metagenome | 327 | Y |
| F018684 | Metagenome / Metatranscriptome | 233 | Y |
| F026858 | Metagenome / Metatranscriptome | 196 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315274_1001235910 | F008808 | GGA | VKNKPKNCPECGEQFDNVFDATDHLLEDDEEFDPALVLPNGYRLLIGSLLRCMYRYADEPEQIKDITQSTYMTLFTAETSPSTVVEVIEDMIVDSNMVGIDEELKRLLADGE |
| Ga0315274_1001235912 | F001515 | GGA | MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEASYWAFVLEESTLIVPTDALRYAVKEFGRDITCNIPPNISKGYLITVDDLMSATRLYKKAMADGLAKN |
| Ga0315274_1001235913 | F001531 | N/A | MDWQRIEPWDFVITHVASEYKRKFNMVEIEDIKLALYEWFNEHPNKLDEWEKIGEKDAKNLLYRSLRNQALDFCQEFKAKNLGYETSDLYYYEPEIVEALLPAVLRGEWGVTHKLNLGRPGRPSAPAEGGNLSAMMIEIESAYRRLSTEDKRILFLRYAESMDYKEISNFLSLNSDDAARMRGNRAVKRLVFKLGGFRPYLDKDTPDSKGEVENNIVEGDKPSNYGERNEASSDEL |
| Ga0315274_1001235926 | F026858 | N/A | MSENLLLDLTPREVEVIRMALRQTQDLHQRNDFKVLVLEVADLRSKIVNAMIDSNASGKPVSVTK |
| Ga0315274_100123594 | F018684 | AGGA | MEEWKLQVSYKIPGDGMINVRANTADELSILLEGVGDYSHQVAAVQKLITGAYTVAPLGTTSSTQNTAPYTSSAPIQGQMPTIAQPPSAITPSGTASPTCIHGVRIFRQGVSQTTGKPYAFWACPTPKGTPDQCKPLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |