NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326597_10042733

Scaffold Ga0326597_10042733


Overview

Basic Information
Taxon OID3300031965 Open in IMG/M
Scaffold IDGa0326597_10042733 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5713
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015466Metagenome / Metatranscriptome254Y
F038894Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0326597_100427331F038894N/ARVAPASNYLLGLATLFQVPQIDPQAEKQKSCDLAKQEEALLAESEAALTAGRTVNAEAVDKNLGIIKQYKPRIASMLKAYCR
Ga0326597_100427334F015466GGAMAWLLLFLCVLLAVTARQAEGFRVARRVRDLRDERAALEARRAELERRIRAGASRQVLVPKVERTLGLHEPADTEFVLFTVPHSGQGTP

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