| Basic Information | |
|---|---|
| Taxon OID | 3300031965 Open in IMG/M |
| Scaffold ID | Ga0326597_10012975 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10968 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F079721 | Metagenome / Metatranscriptome | 115 | Y |
| F088680 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326597_100129757 | F079721 | GGAG | LRGFLTRAGLLAAIVAAATLGCDGNNTAPRPLDGTFALVAENDQPLPSDQGAPDGCCLTLSGSLTVAAATYDLRTSHRNKNNGITFDNSEQGTYTRQGNTLHFTRTGGGGEGLPYLLGPGTVSANNDTVTLLYGDEGPGSNQIRATFTR |
| Ga0326597_100129759 | F088680 | AGG | MSLSVREYLDRAKGQTIPPLVLELILRSGKSFYIKSVFAVDEKAEMVPLRVWDLRALTQADLDTVLRRLGAVQSRDELENIERLHPKLDQGNLWVLLAQIEAIVEWQSDLWPGVDRPEARQVVVGFRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |