NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10791860

Scaffold Ga0315294_10791860


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10791860 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)818
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039116Metagenome / Metatranscriptome164Y
F054850Metagenome / Metatranscriptome139N
F102851Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_107918601F102851N/AFEKTIDVFGSQFEDYIPTGSNIPVRTRRTLVAAGALLVGMSSSSIKRK
Ga0315294_107918602F039116GGAGMGGNGHGFNYLVWSNFASSCVAYWCRYFNSFINIPYTERHRMNSMIAKTLDLSQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLATASVDGELTSEEISAAFGTKTKKK
Ga0315294_107918603F054850AGAAGMKQNWPIVKVVLPADLKGVKPGALPDSLLRDIQPYGRLHWRAADAYHAMRAKALADGIKPFKPTSAGDTYRTLAMQTTAFLQRYQKEP
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