NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10473673

Scaffold Ga0315294_10473673


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10473673 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1152
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009402Metagenome318Y
F038093Metagenome / Metatranscriptome166N
F068462Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_104736731F068462N/ALKCYKHLNGYQDYVYQTYWNCAAATSGPTGQAYDASFAGATPLGTGAATVSGYAFTPFADLTQDDVLNWIWLTLPSGHGKEYYEQKVSGELVYKINYQTEEPALPWNPPVPPPSGSL
Ga0315294_104736732F009402N/AMKKLDEQFESAGFKYKQTHREDMFAIYERGYINTTKDPHYEAIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCLTKKEAYTRLDRMMKEDVINKEAANKKAERKNAK
Ga0315294_104736733F038093N/ACETFYSKNHILLLTHILMDKIKINFLILRYGAILHTVFLFPILYMADIYANTPMFWAFLLNHIMFGYFILVQGCALGIKQTINIIAHQEAVKAREEDTNKNN
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