NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10403166

Scaffold Ga0315294_10403166


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10403166 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1279
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_104031662F000403N/AMEATGVMVSDFVEIIYPQQMMARLMCNGQIVEEYKIEQCDKCSQLKRLDHFGYQKGYDKLDNIIWFCGDCR
Ga0315294_104031663F000903AGGAGGMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAEYLVAKKLGYDYAPGITWDKSKADVGNHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYRNTSQNNWSVPQINLQPIETLQRSNYAHPAI
Ga0315294_104031664F003182AGGAGMHILQFDCSICAKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIAELSQ
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