NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10146643

Scaffold Ga0315294_10146643


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10146643 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2397
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008936Metagenome325Y
F028110Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_101466432F008936N/AMASFEELVKQKIKLLENVPEDIATAAIKAQRDAWRKIAPMLGDMDVDADGNIAQTEDNIRRIGLITDELNKSLAGGEYKDAVQKFLGSIDEGVQLTDDIAKKIDSSFQPNNVQRQLLNISKQNAIDAFFGSGLKQNVTQPFLEQLTANVAARAPLNQAVTALKGVIEGTEANDGRLLANVRTVAGTAQAIADRSYAAAVNEELGIEYFQYLGGEIATTRPFCEHREGQIFHRKEIEAWGNGDNSAGINDIVDGTWAGRIDGTDSRSIFTFVGGWNCRHYLVPVIVNRVPADVKARAKAEGYT
Ga0315294_101466433F028110N/ATATGSLNKLRSLYAFIKPISDQLFTIYEFCLVTMGRMRYGDLFGGVNLVYPTSFDISTPSDYLAVISEGVKAGVPPSITFSNVYNYIRAIHYTDDETSAIYDLIINADELLLMSNADVLARLASGTVEKWQDVLHNSAPQLIMELIRDYIPSEGQPSFLALPMSDKIRLLQEKAAEKIRVQLDPIAQAQQTLLNGIV
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Institute for Fundamental Biomedical Research
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