| Basic Information | |
|---|---|
| Taxon OID | 3300031952 Open in IMG/M |
| Scaffold ID | Ga0315294_10088021 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3236 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5395 | Long. (o) | -110.3891 | Alt. (m) | Depth (m) | 61 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002259 | Metagenome / Metatranscriptome | 577 | Y |
| F006697 | Metagenome / Metatranscriptome | 366 | Y |
| F051646 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315294_100880213 | F051646 | N/A | MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSFVVIFGYDFSPAGGGYTENSFIALVEDRKLNPNSISFFETQQISFYTGTDFFPFIHHVNVNTSIGARQTTNPIPPAPQDAVFFELIHEIDNTPIARQVYITSTNDVAITHGLILNAIPATSGVIPVTSRTPGFLTYGGSGQAVQAQTNYGPGGTPLQFMQPSPKDFQDFALGLLPGNADNQAFATPDATNGLLAANVHLLTLGGDPFVQAAAANYYLCLHYAIYSKTIPEQRP |
| Ga0315294_100880214 | F000710 | N/A | MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNAVQLRVTLTINNDVVIDDVIAHELGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
| Ga0315294_100880215 | F006697 | N/A | MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVTAVAGQTFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQLIINSATVDLVDHQNLNITVGNQVILKDFDPSFNCSSRGLSFDRLHSGFTSSAILEVRLLTEIVIPPQVNFKAELQLSSALIGAGDDVTIVLKGYGRIFSAGNSF |
| Ga0315294_100880216 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSITTAATNFTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFIPTDATGAAYGGLNFNSVKFDLVIGNKTVIKDASCEFGGEQAFWNDGTVGSAVIDLEGAGILIPPQVEYYLVAKAFGTRNREAVSTRLGVYLFGTGALLNFNTTI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |