NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10080007

Scaffold Ga0315904_10080007


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10080007 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3503
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018127Metagenome / Metatranscriptome236Y
F029017Metagenome / Metatranscriptome189Y
F031754Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100800071F018127GGAGMAKKENNWIPWLIIGGLVLYVVNQQPKGGGDPSRPSAVTEVVRSTIPSIRAAYKQAFLDAAAKIEAGEIKDQEAWTKFIADNAGGKNREALDKVYSAIDELKLPVTFAGREAEIARINKEIASAW
Ga0315904_100800073F029017AGGMDELGFVTWKIVQLVLWAGPFGVGAFLAVCFFAGYFLGLKVSRIKRSKPMGAQKLDHIKYDILPDGTLGPGDNRGLEGPE
Ga0315904_100800078F031754AGGAGGMVALLLGLFWLCSEPAKDPTQCDLPDSSALIEELATVKESFTVQPDHIVDTNKMVDPMPSPSDKPHEKTKREILIFVSKNCPPCEKWKRCEMNRFLDAGWSVGIVEVHSYGLTPTFEIESGDKKATIKGYTTLEQAAEAVR
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