NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315904_10021148

Scaffold Ga0315904_10021148


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10021148 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7806
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010764Metagenome / Metatranscriptome299Y
F018913Metagenome / Metatranscriptome232Y
F071163Metagenome / Metatranscriptome122N
F091921Metagenome / Metatranscriptome107Y
F101046Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1002114810F018913GGAGGMTTNKEKAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDGICDELLEL
Ga0315904_1002114820F091921GGAGMIELRIVENEMGMRPDIQYRFMLFSVGQGGYLCPPNPDMKWSEWRTAEYVKAEEIEE
Ga0315904_1002114825F010764GGAGGMIEIQKNYKLTLTEQQAKELYWILKDVNLDVDNELKLVYHELKKIFDSGIR
Ga0315904_1002114831F071163GGAMTKTQSALERVIIELDSWCDNWMPNSYNDPRISLRQIADRARDVLE
Ga0315904_100211489F101046N/AMDFTDYGISLEPEELREIITGKMGFRKCPDCQGDGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPPQYSFGECHLYKCDTCKGVGYVPIGGYGL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.